FluWatch report: March 1 to 7, 2020 (week 10)

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Organization: Public Health Agency of Canada

Date published: 2020-03-13

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Overall Summary
  • Influenza activity remained elevated in week 10; however, several indicators of influenza activity continued to decrease compared to the previous week.
  • In week 10, two thirds of influenza detections were influenza A, and among those subtyped,  A(H1N1) continues to be the dominant subtype circulating in Canada. 
  • The highest cumulative hospitalization rates are among children under 5 years of age and adults 65 years of age and older. Hospitalizations among adults are predominantly due to influenza A, while those among children are due to a mix of influenza A and B.

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Influenza/Influenza-like Illness (ILI) Activity (geographic spread)

During week 10, influenza activity was reported in all regions in all reporting provinces and territories (52 of 53). Among these regions, 52% reported sporadic activity, 46% reported localized activity, and 2% reported widespread activity (Figure 1).

Figure 1 - Map of influenza/ILI activity by province and territory, Canada, week 2020-10

Number of Regions Reporting in week 10: 52 out of 53

Figure 1. Text equivalent follows.

Figure 1 - Text equivalent
Province Influenza Surveillance Region Activity Level
N.L. Eastern Localized
N.L. Labrador-Grenfell Sporadic
N.L. Central Localized
N.L. Western Sporadic
P.E.I. Prince Edward Island Localized
N.S. Zone 1 - Western Localized
N.S. Zone 2 - Northern Localized
N.S. Zone 3 - Eastern Sporadic
N.S. Zone 4 - Central Localized
N.B. Region 1 Sporadic
N.B. Region 2 Localized
N.B. Region 3 Sporadic
N.B. Region 4 Sporadic
N.B. Region 5 Localized
N.B. Region 6 Localized
N.B. Region 7 Localized
Que. Nord-est Sporadic
Que. Québec et Chaudieres-Appalaches Localized
Que. Centre-du-Québec Widespread
Que. Montréal et Laval Sporadic
Que. Ouest-du-Québec Sporadic
Que. Montérégie Sporadic
Ont. Central East Localized
Ont. Central West Localized
Ont. Eastern Localized
Ont. North East Localized
Ont. North West Sporadic
Ont. South West Localized
Ont. Toronto Localized
Man. Northern Regional Sporadic
Man. Prairie Mountain Localized
Man. Interlake-Eastern Sporadic
Man. Winnipeg Sporadic
Man. Southern Health Sporadic
Sask. North Sporadic
Sask. Central Sporadic
Sask. South Localized
Alta. North Zone Sporadic
Alta. Edmonton Localized
Alta. Central Zone Sporadic
Alta. Calgary Sporadic
Alta. South Zone Localized
B.C. Interior Sporadic
B.C. Fraser Localized
B.C. Vancouver Coastal Localized
B.C. Vancouver Island Localized
B.C. Northern Sporadic
Y.T. Yukon No Data
N.W.T. North Sporadic
N.W.T. South Sporadic
Nvt. Qikiqtaaluk Sporadic
Nvt. Kivalliq Sporadic
Nvt. Kitimeot Sporadic

Laboratory-Confirmed Influenza Detections

In week 10, the percentage of laboratory tests positive for influenza decreased for the second week in a row, to 20%. Both influenza A and B circulation decreased in week 10.

The following results were reported from sentinel laboratories across Canada (Figures 2 and 3):

To date this season (weeks 35 to 10), all influenza types and subtypes have circulated. Among the 49,501 laboratory detections of influenza reported:

Detailed information on age and type/subtype has been received for 37,972 laboratory-confirmed influenza cases (Table 1). To date this season (weeks 35 to 10):

For more detailed weekly and cumulative influenza data, see the text descriptions for Figures 2 and 3 or the Respiratory Virus Detections in Canada Report.

Figure 2 - Number of positive influenza tests and percentage of tests positive, by type, subtype and report week, Canada, weeks 2019-35 to 2020-10

Number of Laboratories Reporting in Week 10: 35 out of 36

Figure 2

The shaded area indicates weeks where the positivity rate was at least 5% and a minimum of 15 positive tests were observed, signalling the period of seasonal influenza activity.

Figure 2 - Text equivalent
Surveillance Week A(Unsubtyped) A(H3N2) A(H1N1) Influenza B Percent Positive A Percent Positive B
35 10 16 0 2 1.3 0.1
36 11 13 2 2 1.1 0.1
37 5 17 2 5 0.9 0.2
38 11 15 3 6 1.0 0.2
39 11 21 2 3 1.0 0.1
40 34 9 1 2 1.2 0.1
41 34 18 0 5 1.4 0.1
42 54 12 1 14 1.6 0.3
43 44 13 7 17 1.6 0.3
44 43 23 16 17 1.8 0.3
45 57 57 20 39 2.2 0.7
46 82 43 23 77 2.7 1.4
47 118 49 33 124 3.1 1.9
48 225 67 42 223 4.9 3.2
49 281 79 41 336 5.3 4.1
50 463 100 73 654 7.7 8.0
51 794 149 169 1094 10.6 10.4
52 1223 267 197 1439 15.0 12.7
1 1620 261 431 1533 15.8 10.3
2 1690 165 493 1463 15.8 9.4
3 1575 139 417 1418 16.2 10.3
4 1727 133 370 1952 15.2 12.7
5 1983 97 440 2269 16.0 13.7
6 1970 75 344 2265 15.6 14.1
7 1741 76 321 1851 15.5 12.8
8 1768 74 255 1559 16.3 11.6
9 1928 57 303 1288 16.6 8.9
10 1733 73 360 1112 13.6 6.5

Figure 3 - Distribution of positive influenza specimens by type/subtype and province/territory, Canada, weeks 2019-35 to 2020-10

Figure 3. Text equivalent follows.
Figure 3 - Text equivalent
ProvincesTable Figure 3 - Footnote 1 Cumulative (August 25, 2019 to March 7, 2020)
A Total A(H1N1) A(H3N2) A(UnS)Table Figure 3 - Footnote 3 B Total A & B Total
B.C. 2942 275 242 1223 1956 4898
Alta. 3787 1304 1221 1262 3160 6947
Sask. 1370 59 102 1209 700 2070
Man. 1375 160 112 1103 848 2223
Ont. 6111 2445 423 3243 2229 8340
Que. 11968 0 0 11968 9844 21812
N.B. 797 59 29 709 1154 1951
N.S. 123 3 2 118 165 288
P.E.I. 106 0 0 106 72 178
N.L. 111 4 32 75 344 455
Y.T. 52 4 8 37 14 66
N.W.T 77 64 12 1 106 183
Nvt. 53 5 11 37 37 90
Canada 28872 4382 2194 21091 20629 49501
PercentageTable Figure 3 - Footnote 2 58% 15% 8% 73% 42% 100%
Table Figure 3 - Footnote 1

Specimens from NWT, YT, and Nvt are sent to reference laboratories in other provinces.

Return to Table Figure 3 - Footnote 1 referrer

Table Figure 3 - Footnote 2

Percentage of tests positive for sub-types of influenza A are a percentage of all influenza A detections.

Return to Table Figure 3 - Footnote 2 referrer

Table Figure 3 - Footnote 3

Unsubtyped: The specimen was typed as influenza A, but no result for subtyping was available.

Return to Table Figure 3 - Footnote 3 referrer

Table 1 - Cumulative number of positive influenza specimens by type, subtype and age group reported through case-based laboratory reporting, Canada, weeks 2019-35 to 2020-10
Age groups (years) Cumulative (August 25, 2019 to March 7, 2020)
Influenza A B Influenza A and B
A Total A(H1N1) A(H3N2) A (Un subtyped) Table 1 Footnote 1 Total # %
0-4 3496 378 197 2921 3851 7347 19%
5-19 2434 243 246 1945 5619 8053 21%
20-44 4480 799 310 3371 4909 9389 25%
45-64 4232 828 287 3117 966 5198 14%
65+ 6739 916 894 4929 1246 7985 21%
Total 21381 3164 1934 16283 16591 37972 100%
Table 1 Footnote 1

Unsubtyped: The specimen was typed as influenza A, but no result for subtyping was available.

Table 1 Return to footnote 1 referrer

Syndromic / Influenza-like Illness Surveillance

Healthcare Professionals Sentinel Syndromic Surveillance

In week 10, 1.5% of visits to healthcare professionals were due to influenza-like illness (ILI) which is the same as the previous week and remains below the average for this time of year (Figure 4).

Figure 4 – Percentage of visits for ILI reported by sentinels by report week, Canada, weeks 2019-35 to 2020-10

Number of Sentinels Reporting in week 10: 82

Figure 4

The shaded area represents the maximum and minimum percentage of visits for ILI reported by week from seasons 2014-2015 to 2018-2019

Figure 4 - Text equivalent
Surveillance Week 2019-2020 Average Min Max
35 0.6% 0.6% 0.4% 0.9%
36 0.4% 0.6% 0.4% 0.9%
37 0.7% 0.7% 0.5% 1.0%
38 1.1% 0.7% 0.6% 1.0%
39 0.8% 0.9% 0.5% 1.2%
40 1.0% 1.2% 0.8% 1.7%
41 0.9% 1.7% 0.8% 2.8%
42 1.1% 1.6% 1.2% 2.1%
43 0.7% 1.2% 0.8% 1.7%
44 0.9% 1.2% 0.7% 1.7%
45 0.7% 1.2% 0.9% 1.5%
46 1.1% 1.4% 1.2% 1.8%
47 1.2% 1.6% 1.1% 2.2%
48 0.9% 1.5% 1.1% 2.2%
49 1.0% 1.7% 1.0% 2.8%
50 1.4% 1.5% 1.1% 1.7%
51 1.1% 1.9% 1.4% 2.7%
52 2.5% 2.0% 1.0% 3.1%
1 2.9% 3.4% 1.9% 5.4%
2 1.5% 3.4% 1.8% 5.7%
3 1.8% 2.3% 1.3% 3.7%
4 1.4% 2.0% 1.1% 2.9%
5 1.5% 2.1% 1.4% 3.1%
6 1.7% 2.4% 1.4% 4.0%
7 1.3% 2.4% 0.9% 3.5%
8 1.4% 2.3% 0.8% 3.4%
9 1.5% 2.3% 0.9% 3.1%
10 1.5% 2.0% 1.0% 2.8%
11 #N/A 1.9% 1.1% 2.8%
12 #N/A 1.6% 0.6% 2.6%
13 #N/A 1.6% 1.1% 2.6%
14 #N/A 1.7% 1.1% 3.0%
15 #N/A 1.3% 0.9% 1.9%
16 #N/A 1.2% 0.8% 1.7%
17 #N/A 1.2% 0.7% 1.7%
18 #N/A 1.3% 0.5% 2.0%
19 #N/A 0.9% 0.6% 1.3%
20 #N/A 1.1% 0.6% 1.5%
21 #N/A 0.9% 0.5% 1.3%
22 #N/A 0.7% 0.3% 1.0%
23 #N/A 0.8% 0.6% 1.0%
24 #N/A 0.7% 0.6% 1.0%
25 #N/A 0.6% 0.4% 0.8%
26 #N/A 0.8% 0.5% 1.4%
27 #N/A 0.6% 0.5% 0.7%
28 #N/A 0.7% 0.5% 1.3%
29 #N/A 0.9% 0.6% 1.7%
30 #N/A 0.6% 0.2% 0.9%
31 #N/A 0.4% 0.2% 0.6%
32 #N/A 0.8% 0.3% 1.2%
33 #N/A 0.7% 0.4% 1.3%
34 #N/A 0.7% 0.4% 1.5%

FluWatchers

The proportion of FluWatchers participants reporting symptoms of cough and fever decreased in week 10 compared to the previous week. In week 10, 3,174 participants reported to FluWatchers, of which 2.1% (67) reported symptoms of cough and fever (Figure 5).

Among the 67 participants who reported cough and fever:

If you are interested in becoming a FluWatcher, sign up today.

Figure 5 - Percentage of FluWatchers participants reporting cough and fever, Canada, weeks 2019-40 to 2020-10

Number of participants reporting in week 10: 3,174

Figure 5. Text equivalent follows.
Figure 5 - Text equivalent
Surveillance Week % cough and fever
40 2.2%
41 1.8%
42 1.7%
43 2.2%
44 1.6%
45 1.4%
46 1.2%
47 1.5%
48 1.7%
49 2.2%
50 2.1%
51 2.6%
52 4.1%
1 4.3%
2 3.1%
3 3.3%
4 3.1%
5 3.4%
6 3.0%
7 2.7%
8 2.7%
9 2.4%
10 2.1%

Online Figure - Geographic distribution of FluWatchers participants reporting cough and fever, Canada, week 2020-10

Click on the map to access the link

map

Influenza Outbreak Surveillance

In week 10, a total of 20 outbreaks were reported: 16 in long term care facilities, three in facilities categorized as 'other', which includes facilities such as private personal care homes, correctional facilities, and colleges/universities, and one in an acute care facility (Figure 6). In addition, 16 ILI outbreaks were reported, 15 in schools/daycares and one in a facility categorized as ‘other’.

To date this season, a total of 832 laboratory-confirmed influenza outbreaks have been reported; 64% (532) in long-term care facilities, 24% (203) in facilities categorized as ‘other’, 10% (82) in acute care facilities, and 2% (15) in schools/daycares. Of the 786 outbreaks where influenza type was reported, 88% (690) were due to influenza A. Among the 290 outbreaks for which the influenza A subtype was reported, 52% were associated with A(H1N1) and 48% with A(H3N2). To date this season, 162 ILI outbreaks have also been reported; 98% (158) in schools/daycares and 2% (4) in facilities categorized as ‘other’.

Figure 6 - Number of new outbreaks of laboratory-confirmed influenza by report week, Canada, weeks 2019-35 to 2020-10

Number of provinces and territories reporting in week 10: 12 out of 13

Figure 6

Figure 6 - Text equivalent
Surveillance Week Acute Care Facilities Long Term Care Facilities Other Schools and Daycares Remote and/or Isolated Communities
35 0 0 0 0 0
36 0 0 0 0 0
37 0 0 0 0 0
38 0 1 0 0 0
39 0 1 0 0 0
40 0 2 0 0 0
41 0 2 1 0 0
42 1 0 0 0 0
43 0 0 1 0 0
44 0 0 1 0 0
45 0 2 4 0 0
46 1 4 0 0 0
47 0 2 1 1 0
48 1 6 2 2 0
49 2 10 1 1 0
50 4 10 4 1 0
51 4 16 11 0 0
52 4 48 15 0 0
1 17 86 40 0 0
2 12 92 36 0 0
3 10 52 7 1 0
4 5 50 19 3 0
5 5 23 9 0 0
6 8 17 25 4 0
7 1 31 11 1 0
8 4 32 6 1 0
9 2 29 6 0 0
10 1 16 3 0 0

Severe Outcomes Influenza Surveillance

Provincial/Territorial Influenza Hospitalizations and Deaths

To date this season, 2,136 influenza-associated hospitalizations were reported by participating provinces and territories Footnote 1.

265 ICU admissions and 85 deaths have been reported.

Figure 7 - Cumulative rates of influenza-associated hospitalization by age group and epidemiological week, Canada, participating provinces and territories Footnote 1 weeks 2019-35 to 2020-10

Number of provinces and territories reporting in week 10: 8 out of 9

Figure 7

Footnote ‡

Influenza-associated hospitalizations are reported by Alberta, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Prince Edward Island and Yukon. Only hospitalizations that require intensive medical care are reported by Saskatchewan.

Return to footnote 1 referrer

Figure 7 - Text equivalent
Surveillance Week 0-4 yrs 5-19 yrs 20-44 yrs 45-64 yrs 65+ yrs
35 0.0 0.0 0.0 0.0 0.0
36 0.0 0.0 0.0 0.0 0.2
37 0.0 0.0 0.0 0.1 0.2
38 0.0 0.0 0.0 0.1 0.4
39 0.2 0.0 0.0 0.1 0.6
40 0.2 0.0 0.0 0.1 0.8
41 0.4 0.2 0.1 0.2 1.1
42 0.8 0.2 0.1 0.2 1.3
43 1.0 0.2 0.2 0.3 1.6
44 1.5 0.2 0.2 0.5 2.1
45 1.9 0.4 0.4 0.8 2.8
46 1.9 0.4 0.6 1.1 3.3
47 3.1 0.6 0.8 1.5 4.6
48 5.0 1.1 1.0 1.6 5.7
49 7.1 1.9 1.3 2.0 7.5
50 11.1 3.0 1.8 2.3 10.2
51 14.3 3.7 2.5 3.5 13.6
52 18.7 5.8 3.7 4.5 19.3
1 27.7 6.5 4.8 6.6 28.1
2 33.8 7.6 6.0 8.4 34.5
3 38.8 8.4 7.0 10.0 40.4
4 43.7 9.6 8.2 11.8 45.4
5 52.5 10.7 9.4 13.5 50.9
6 57.5 11.8 10.4 14.9 55.7
7 59.4 12.7 11.0 16.2 58.7
8 61.9 13.5 11.7 17.1 62.3
9 64.2 14.1 12.0 17.9 65.3
10 65.5 14.7 12.3 18.6 68.3

Pediatric Influenza Hospitalizations and Deaths

In week 10, 52 pediatric (≤16 years of age) laboratory-confirmed influenza-associated hospitalizations were reported by the Immunization Monitoring Program Active (IMPACT) network (Figure 8). After high numbers of cases reported since late-December, the weekly number of cases has been approximately equal to the 5-year average over the past two weeks. An approximately equal proportion of cases of influenza A and B continues to be observed.

A greater number of total pediatric hospitalizations with influenza have been reported this season compared to the same period during the past 9 seasons. The elevated number of cases this season compared to previous seasons is likely due to the concurrent circulation of influenza A and B in the early part of the influenza season, as well as an above average number of hospitalizations with influenza B. In addition, the number of influenza A-associated pediatric hospitalizations is above the average for this time of year, which is expected when A(H1N1) is the predominant circulating virus.

To date this season (weeks 35 to 10):

Figure 8 - Number of pediatric (≤16 years of age) hospitalizations reported by the IMPACT network, by week, Canada, weeks 2019-35 to 2020-10

Figure 8

The shaded area represents the maximum and minimum number of cases reported by week from seasons 2014-15 to 2018-19

Figure 8 - Text equivalent
Surveillance week 2019-2020 Average Min Max
35 0 0 0 1
36 2 0 0 1
37 0 1 0 2
38 0 1 0 2
39 1 1 0 3
40 0 1 0 2
41 2 1 0 3
42 2 2 0 5
43 1 5 2 12
44 2 5 1 15
45 3 10 2 37
46 6 13 1 41
47 6 13 2 36
48 26 18 2 40
49 23 22 3 47
50 38 29 4 50
51 60 41 5 84
52 98 54 14 89
1 106 55 21 94
2 101 40 12 63
3 83 44 28 64
4 89 53 34 93
5 114 47 25 70
6 111 49 15 79
7 72 59 17 120
8 85 63 25 139
9 61 58 13 153
10 52 55 17 135
Figure 9 - Cumulative number of pediatric hospitalizations (≤16 years of age) with influenza by age-group reported by the IMPACT network, Canada, weeks 2019-35 to 2020-10

Figure 9

Figure 9 - Text Description
Age Group Total
0-5 mo 137
6-23 mo 299
2-4 yr 313
5-9 yr 256
10-16 yr 139

Adult Influenza Hospitalizations and Deaths

Surveillance of laboratory-confirmed influenza-associated adult (≥16 years of age) hospitalizations by the Canadian Immunization Research Network (CIRN) Serious Outcomes Surveillance (SOS) network began on November 1st  for the 2019-20 season. In week 10, the number of cases declined compared to the previous week.

To date this season, 738 hospitalizations, 74 intensive care unit admissions, and 35 deaths have been reported (Figure 10).

Figure 10 - Number of adult hospitalizations (≥16 years of age) with influenza reported by the CIRN-SOS network, by week, Canada, weeks 2019-45 to 2020-10

Figure 10

Figure 10 - Text Description
Surveillance Week Number of Hospitalizations
35 No data
36 No data
37 No data
38 No data
39 No data
40 No data
41 No data
42 No data
43 No data
44 No data
45 No data
46 2
47 4
48 8
49 12
50 14
51 35
52 80
1 92
2 68
3 56
4 46
5 53
6 70
7 48
8 54
9 57
10 28
Figure 11 - Cumulative numbers of adult hospitalizations (≥16 years of age) with influenza by age-group reported by the CIRN-SOS network, Canada, weeks 2019-45 to 2020-10

Figure 11

Figure 11 - Text Description
Age Group Total hospitalizations
16-34 yr 73
35-49 yr 62
50-64 yr 130
65-79 yr 246
80+ yr 227

Influenza Strain Characterizations

From September 1, 2019 to March 12, 2020, the National Microbiology Laboratory (NML) has characterized 1,224 influenza viruses (474 A(H1N1), 177 A(H3N2) and 573 influenza B) that were received from Canadian laboratories.

Influenza A(H3N2)

Over recent years, circulating strains of A(H3N2) have evolved, and are increasingly difficult to characterize by hemagglutination inhibition (HI) assay. Genetic characterization is established by sequencing the hemagglutinin (HA) gene of the influenza viruses to compare their genetic properties.

Antigenic Characterization:

Among the 55 influenza A(H3N2) viruses antigenically characterized to date, the majority (80%) showed reduced titer by HI assay to A Kansas/14/2017 using antiserum raised against egg-propagated A Kansas/14/2017. Eleven viruses were characterized as A Kansas/14/2017-like (Figure 12a).

Genetic Characterization:

Nearly all (98%) of the 160 A(H3N2) viruses genetically characterized this season belonged to genetic group 3C.2a1b based on sequence analysis of the HA gene. Three viruses belonged to the genetic group 3C.3a (Figure 13).

Group 3C.2a1b viruses analysed represent:

A/Kansas/14/2017 belongs to genetic group 3C.3a and is the influenza A(H3N2) component of the 2019-20 Northern Hemisphere influenza vaccine.

Influenza A(H1N1)

Among the 474 A(H1N1) viruses characterized to date, 53% were antigenically similar to A/Brisbane/02/2018 by HI testing using antiserum raised against egg-propagated A/Brisbane/02/2018 (Figure 12 b).

A/Brisbane/02/2018 is the influenza A(H1N1) component of the 2019-20 Northern Hemisphere influenza vaccine.

Influenza B

Antigenic Characterization:

Among the 182 influenza B viruses antigenically characterized this season, the vast majority (180) belonged to the B/Victoria lineage. Two viruses were antigenically characterized as similar to B/Phuket/3073/2013 (B/Yamagata lineage).

The majority (89%, 161) of B/Victoria lineage viruses showed reduced titer by HI assay to B/Colorado/06/2017 using antiserum raised against cell culture-propagated B/Colorado/06/2017 (Figure 12c).

Sequence analysis of 150 B/Victoria lineage viruses with reduced titre to B/Colorado/06/2017 showed that 100% had a three amino acid deletion (162-164) in the HA gene and belong to the genetic subclade V1A.3 (3Del). Sequencing is pending for the remaining viruses.

Genetic Characterization:

Genetic characterization was also performed on 391 B/Victoria lineage viruses. All of these viruses had a three amino acid deletion (162-164) in the HA gene and belong to the genetic subclade V1A.3 (3Del).

To date, 100% (541) of influenza B/Victoria viruses genetically characterized belong to the genetic subclade V1A.3 (3Del) (Fig 13b). Viruses in this genetic subclade are antigenically distinct from the vaccine strain B/Colorado/06/2017, which belongs to genetic subclade V1A.1 (2Del).

The recommended influenza B components for the 2019-20 Northern Hemisphere influenza vaccine are B/Colorado/06/2017 (Victoria lineage) and B/Phuket/3073/2013 (Yamagata lineage). B/Phuket/3073/2013 is included in the quadrivalent influenza vaccine. The vaccine strain B/Colorado/06/2017 belongs to genetic subclade V1A.1.

Figure 12 - Distribution of antigenic phenotypes among characterized influenza viruses, Canada, September 1, 2019 to March 12, 2020

Figure 12

Figure 12 - Text Description
A) Antigenic phenotypes among influenza A(H3N2) viruses
Number of viruses characterized: 55
Antigenic phenotype of A(H3N2) virus Number of viruses Percentage
A/Kansas/14/2017-like 11 20%
Reduced titer to A/Kansas/14/2017 44 80%
B) Antigenic phenotypes among influenza A(H1N1) viruses
Number of viruses characterized: 474
Antigenic phenotype of A(H1N1) virus Number of viruses Percentage
A/Brisbane/02/2018-like 251 53%
Reduced titer to A/Brisbane/02/2018 223 47%
C) Antigenic phenotypes among influenza B viruses
Number of viruses characterized: 182
Antigenic phenotype of influenza B virus Number of viruses Percentage
B/Colorado/06/2017-like 19 10%
Reduced titer to B/Colorado/06/2017 161 88%
B/Phuket/3073/2013-like 2 1%
Figure 13 - Distribution of genetic clades among characterized influenza viruses, Canada, September 1, 2019 to March 12, 2020

Figure 13

Figure 13 - Text Description
A) Distribution of genetic clades among characterized A(H3N2) viruses
Number of viruses sequenced: 160
Genetic Clade of A(H3N2) virus Number of viruses Percentage
Subclade 3C.2a1b 157 98%
Clade 3C.3a 3 2%
B) Distribution of genetic clades among characterized influenza B/Victoria viruses
Number of viruses sequenced: 541
Genetic Clade of influenza B/Victoria virus Number of viruses Percentage
Subclade V1A.3 (3Del) 541 100%
Subclade V1A.1 (2Del) 0 0%

Antiviral Resistance

The National Microbiology Laboratory (NML) also tests influenza viruses received from Canadian laboratories for antiviral resistance. From September 1, 2019 to March 12, 2020, the following results were reported:

Oseltamivir:

669 influenza viruses (155 A(H3N2), 251 A(H1N1) and 263 B) were tested for resistance to oseltamivir:

Zanamivir:

669 influenza viruses (155 A(H3N2), 251 A(H1N1) and 263 B) were tested for resistance to zanamivir:

Amantadine:

High levels of resistance to amantadine persist among influenza A(H1N1) and influenza A(H3N2) viruses. All viruses tested this season were resistant.

Vaccine Monitoring

Vaccine monitoring refers to activities related to the monitoring of influenza vaccine coverage and effectiveness.

Vaccine Effectiveness

The Canadian Sentinel Practitioner Surveillance Network (SPSN) provides estimates of the effectiveness of the seasonal influenza vaccine in preventing medically-attended illness due to laboratory-confirmed influenza among Canadians.

Based on data collected between November 1, 2019 and February 1, 2020, vaccine effectiveness (VE) was estimated to be 58% for any influenza, 44% for influenza A(H1N1), 62% for influenza A(H3N2), and 69% for influenza B. Substantial protection was observed among children 1 to 19 years of age against both influenza A and B. A good level of protection was also observed among working age adults (20-64 yrs) across all influenza types (Table 2). VE among adults 65 years and older, although imprecise due to small numbers, was lower at 18% (95% CI -59 to 58). The SPSN interim estimates are published and available online.

More information on the network and past VE findings can be viewed on the SPSN website.

Updated influenza vaccine effectiveness estimates will be published at the end of the 2019/2020 influenza season. At that time, sufficient data will likely be available to estimate VE by age-group, including adults 65 years and older with greater precision, as well as for influenza A subtypes.

Table 2 - Vaccine effectiveness estimates against medically-attended influenza illness, SPSN, November 1, 2019, to February 1, 2020
- All ages 1-19 years 20-64 years
VE(%) (CI)Table 2 - Footnote * N VE(%) (CI)Table 2 - Footnote * VE(%) (CI)Table 2 - Footnote *
All Influenza 58 (47, 66) 2808 74 (59, 84) 55 (41, 66)
Influenza A 49 (34, 60) 2128 70 (44, 84) 45 (25, 59)
Influenza A(H1N1) 44 (26, 58) 1948 - -
Influenza A(H3N2) 62 (37, 77) 1561 - -
Influenza B 69 (57, 77) 2080 77 (59, 87) 68 (51, 79)
CI: 95% confidence interval
Footnote *

adjusted for age group, province, specimen collection interval and calendar time

Return to table 2 footnote * referrer

Vaccine Coverage

Influenza vaccine coverage estimates for the 2019-20 season are anticipated to be available in March 2020.

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