FluWatch report: April 21 to April 27, 2019 (Week 17)

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Organization: Public Health Agency of Canada

Date published: 2019-05-03

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Overall Summary

  • Influenza activity is declining, however influenza A(H3N2) and influenza B continue to circulate in many regions across the country.
  • A second smaller wave of influenza activity, dominated by A(H3N2), continued to decrease this week.
  • The proportion of laboratory detections of influenza A(H3N2) has been steadily increasing since mid-January and accounted for 82% of subtyped influenza A detections this week; however, influenza A(H1N1)pdm09 remains the predominant subtype to date this season.
  • Detections of influenza A continue to be greater than those of influenza B. There is currently very little influenza B circulation compared to previous seasons.

Influenza/Influenza-like Illness Activity (geographic spread)

During week 17, the following influenza activity levels were reported (Figure 1):

  • 13 regions reported localized activity: in Ont.(6), Que.(3), N.B.(1), N.S.(1), and N.L.(2).
  • 27 regions reported sporadic activity: in B.C.(4), Sask.(3), Man.(4), Que.(3), N.S.(3), N.B.(5), P.E.I (1), N.L.(2) Y.T.(1) and N.W.T.(1)
  • Four regions in four different provinces reported no activity.

Figure 1 – Map of overall influenza/ILI activity by province and territory, Canada, week 2019-17

Figure 1. Text equivalent follows.
Figure 1 - Text equivalent
Province Influenza Surveillance Region Activity Level
N.L. Eastern Localized
N.L. Labrador-Grenfell Sporadic
N.L. Central Sporadic
N.L. Western Localized
P.E.I. Prince Edward Island Sporadic
N.S. Zone 1 - Western Sporadic
N.S. Zone 2 - Northern Sporadic
N.S. Zone 3 - Eastern Localized
N.S. Zone 4 - Central Sporadic
N.B. Region 1 Sporadic
N.B. Region 2 Localized
N.B. Region 3 Sporadic
N.B. Region 4 Sporadic
N.B. Region 5 No Activity
N.B. Region 6 Sporadic
N.B. Region 7 Sporadic
Que. Nord-est Sporadic
Que. Québec et Chaudieres-Appalaches Sporadic
Que. Centre-du-Québec Localized
Que. Montréal et Laval Localized
Que. Ouest-du-Québec Sporadic
Que. Montérégie Localized
Ont. Central East Localized
Ont. Central West Localized
Ont. Eastern Localized
Ont. North East Localized
Ont. North West No Activity
Ont. South West Localized
Ont. Toronto Localized
Man. Northern Regional No Activity
Man. Prairie Mountain Sporadic
Man. Interlake-Eastern Sporadic
Man. Winnipeg Sporadic
Man. Southern Health Sporadic
Sask. North Sporadic
Sask. Central Sporadic
Sask. South Sporadic
Alta. North Zone No Data
Alta. Edmonton No Data
Alta. Central Zone No Data
Alta. Calgary No Data
Alta. South Zone No Data
B.C. Interior Sporadic
B.C. Fraser Sporadic
B.C. Vancouver Coastal Sporadic
B.C. Vancouver Island Sporadic
B.C. Northern No Activity
Y.T. Yukon Sporadic
N.W.T. North Sporadic
N.W.T. South No Activity
Nvt. Qikiqtaaluk No data
Nvt. Kivalliq No data
Nvt. Kitimeot No data

Laboratory-Confirmed Influenza Detections

In week 17, the following results were reported from sentinel laboratories across Canada (Figures 2 and 3):

To date this season, 45,949 laboratory-confirmed influenza detections have been reported:

To date this season, detailed information on age and type/subtype has been received for 36,824 laboratory-confirmed influenza cases (Table 1):

For more detailed weekly and cumulative influenza data, see the text descriptions for Figures 2 and 3 or the Respiratory Virus Detections in Canada Report.

Figure 2 – Number of positive influenza tests and percentage of tests positive, by type, subtype and report week, Canada, weeks 2018-35 to 2019-17

Figure 2. Text equivalent follows.

The shaded area indicates weeks where the positivity rate was at least 5% and a minimum of 15 positive tests were observed, signalling the period of seasonal influenza activity.

Data for week 14 excludes subtyping results from one jurisdiction due to batch reporting of subtype information. The results for week 14 should be interpreted with caution.

Figure 2 - Text equivalent
Surveillance Week A(Unsubtyped) A(H3N2) A(H1N1)pdm09 Influenza B
35 3 2 7 0
36 4 7 4 0
37 3 2 3 1
38 6 3 2 3
39 11 5 1 3
40 16 7 29 3
41 27 6 21 3
42 40 19 55 2
43 83 23 128 4
44 169 13 214 6
45 244 18 295 15
46 346 10 404 9
47 449 17 507 8
48 679 29 632 10
49 851 35 785 16
50 1368 35 828 14
51 1890 54 953 21
52 2292 55 903 26
1 2387 58 893 31
2 1985 93 1061 43
3 1613 101 585 40
4 1483 93 532 48
5 1449 112 433 43
6 1234 118 315 42
7 1116 128 244 33
8 1066 236 216 40
9 1172 285 213 64
10 1085 335 268 71
11 990 357 197 90
12 959 380 155 131
13 939 387 128 167
14 1091 292 41 169
15 756 514 121 157
16 619 273 40 175
17 484 234 52 190

Figure 3 – Cumulative numbers of positive influenza specimens by type/subtype and province/territory, Canada, weeks 2018-35 to 2019-17

Figure 3. Text equivalent follows.
Figure 3 - Text equivalent
Reporting provincesTable Figure 3 - Footnote 1 Week (April 21 to April 27, 2019) Cumulative (August 26, 2018 to April 27, 2019)
Influenza A B Influenza A B A & B
Total
A
Total
A
(H1N1)pdm09
A
(H3N2)
A(UnS)Table Figure 3 - Footnote 3 B
Total
A
Total
A
(H1N1)pdm09
A
(H3N2)
A(UnS)Table Figure 3 - Footnote 3 B
Total
BC 97 14 46 37 7 6216 3138 1472 1606 215 6431
AB 127 15 85 27 16 6736 3613 997 2126 250 6986
SK 18 1 4 13 3 2361 1384 124 853 91 2452
MB 18 5 9 4 12 1125 317 80 728 37 1162
ON 134 8 79 47 24 6088 2062 1551 2475 214 6302
QC 237 0 0 237 81 16624 0 0 16624 586 17210
NB 59 0 0 59 36 2781 230 34 2517 245 3026
NS 15 0 0 15 2 774 0 0 774 17 791
PEI 4 0 4 0 1 277 220 56 1 1 278
NL 30 0 0 30 0 1001 1 0 1000 4 1005
YT 10 8 0 2 0 109 62 12 35 0 109
N.W.T 1 1 0 0 0 176 174 2 0 1 177
NU 0 0 0 0 0 20 20 0 0 0 20
Canada 750 52 227 471 182 44288 11221 4328 28739 1661 45949
PercentageTable Figure 3 - Footnote 2 80% 7% 30% 63% 20% 96% 25% 10% 65% 4% 100%
Table Figure 3 - Footnote 1

Specimens from NWT, YT, and Nvt are sent to reference laboratories in other provinces.

Return to Table Figure 3 - Footnote 1 referrer

Table Figure 3 - Footnote 2

Percentage of tests positive for sub-types of influenza A are a percentage of all influenza A detections.

Return to Table Figure 3 - Footnote 2 referrer

Table Figure 3 - Footnote 3

Unsubtyped: The specimen was typed as influenza A, but no result for subtyping was available.

Return to first Table Figure 3 - Footnote 3 referrer

Discrepancies in values in Figures 2 and 3 may be attributable to differing data sources.

Cumulative data includes updates to previous weeks.

Table 1 – Cumulative numbers of positive influenza specimens by type, subtype and age-group reported through case-based laboratory reporting, Canada, weeks 2018-35 to 2019-17
Age groups (years) Cumulative (August 26, 2018 to April 27, 2019)
Influenza A B Influenza A and B
A Total A(H1N1) pdm09 A(H3N2) A (UnS)Table 1 – Note 1 Total # %
0-4 6632 1684 228 4720 235 6867 19%
5-19 5040 1391 442 3207 377 5417 15%
20-44 6741 2003 561 4177 260 7001 19%
45-64 6854 1961 592 4301 98 6952 19%
65+ 10358 1462 2471 6425 229 10587 29%
Total 35625 8501 4294 22830 1199 36824 100%
Table 1 – Note 1

UnS: unsubtyped: The specimen was typed as influenza A, but no result for subtyping was available.

Return to Table 1 – Note 1

Syndromic / Influenza-like Illness Surveillance

Healthcare Professionals Sentinel Syndromic Surveillance

In week 17, 0.6% of visits to healthcare professionals were due to influenza-like illness (ILI) (Figure 4).

Figure 4 – Percentage of visits for ILI reported by sentinels by report week, Canada, weeks 2018-35 to 2019-17

Number of Sentinels Reporting in Week 17: 77

Figure 4. Text equivalent follows.

The shaded area represents the maximum and minimum percentage of visits for ILI reported by week from seasons 2013-2014 to 2017-2018

Figure 4 - Text equivalent
Surveillance Week 2018-19 Average Min Max
35 0.6% 0.8% 0.5% 1.2%
36 0.7% 0.8% 0.7% 1.0%
37 0.6% 0.9% 0.7% 1.0%
38 0.5% 1.1% 1.0% 1.4%
39 1.8% 1.1% 0.9% 1.4%
40 0.6% 1.3% 0.9% 1.6%
41 1.1% 1.4% 0.9% 2.4%
42 1.0% 1.4% 1.0% 1.9%
43 0.9% 1.3% 1.0% 1.5%
44 0.8% 1.3% 0.9% 1.6%
45 1.3% 1.3% 1.2% 1.5%
46 1.3% 1.6% 1.0% 2.0%
47 1.3% 1.5% 1.1% 1.9%
48 1.5% 1.6% 0.8% 2.1%
49 1.6% 1.5% 1.0% 2.5%
50 1.5% 2.3% 1.3% 3.7%
51 1.0% 2.5% 1.6% 4.1%
52 3.2% 4.5% 1.7% 7.1%
1 2.8% 3.7% 1.7% 5.2%
2 1.8% 3.0% 1.1% 4.5%
3 1.1% 2.5% 1.3% 3.6%
4 1.3% 2.4% 1.7% 3.5%
5 1.4% 2.7% 2.0% 4.4%
6 0.9% 2.7% 2.1% 3.3%
7 0.8% 2.4% 1.7% 3.0%
8 0.9% 2.3% 1.9% 2.7%
9 1.0% 2.2% 1.8% 2.7%
10 1.1% 2.1% 1.8% 2.7%
11 0.5% 2.1% 1.7% 2.7%
12 1.0% 1.8% 1.1% 2.7%
13 1.2% 1.7% 1.2% 2.6%
14 1.0% 1.8% 1.3% 2.4%
15 0.9% 1.6% 0.9% 1.9%
16 0.8% 1.5% 1.0% 1.9%
17 0.6% 1.5% 0.9% 2.2%

Participatory Syndromic Surveillance

In week 17, 1,986 participants reported to FluWatchers, of which 45 (2.3%) reported symptoms of cough and fever (Figure 5).

Among the 45 participants who reported fever and cough:

Figure 5 - Percentage of participants reporting cough and fever, Canada, weeks 2018-40 to 2019-17

Number of Participants Reporting in Week 17: 1,986

Figure 5. Text equivalent follows.
Figure 5 - Text equivalent
Surveillance Week % cough and fever
40 2.6%
41 2.5%
42 1.7%
43 1.5%
44 1.3%
45 1.7%
46 2.0%
47 1.3%
48 2.4%
49 2.0%
50 3.7%
51 3.9%
52 3.6%
1 3.4%
2 2.8%
3 2.5%
4 2.9%
5 3.0%
6 2.6%
7 2.7%
8 2.5%
9 2.7%
10 3.1%
11 2.6%
12 2.4%
13 2.4%
14 2.3%
15 1.8%
16 2.4%
17 2.3%

Influenza Outbreak Surveillance

In week 17, 18 new laboratory-confirmed influenza outbreaks were reported: long-term care facilities (LTCF) (10) acute care facilities (1) and other settings (7). No new ILI outbreaks were reported. Among the outbreaks with available information (14), 13 were associated with influenza A (of which 4 were associated with A(H3N2)), and one outbreak was associated with influenza B.

To date this season, 801 laboratory-confirmed influenza outbreaks have been reported (Figure 6): 

To date this season, 151 ILI outbreaks have been reported; 85 occurred in LTCF, 61 in schools, one in other settings and four in acute care facilities.

Figure 6 – Number of new outbreaks of laboratory-confirmed influenza by report week, Canada, weeks 2018-35 to 2019-17

Figure 6. Text equivalent follows.
Figure 6 - Text equivalent
Surveillance Week Acute Care Facilities Long Term Care Facilities Other Schools and Daycares Remote and/or Isolated Communities
35 0 0 0 0 0
36 0 0 0 0 0
37 0 0 0 0 0
38 0 0 0 0 0
39 0 0 0 0 0
40 0 2 0 1 0
41 0 0 0 0 0
42 0 2 1 0 0
43 0 3 1 0 0
44 0 1 1 2 0
45 0 2 1 3 0
46 2 5 1 3 0
47 2 4 0 1 0
48 2 6 1 5 0
49 1 2 3 1 0
50 3 9 5 4 0
51 3 12 4 2 0
52 4 25 5 0 0
1 5 40 11 0 0
2 8 38 7 0 0
3 3 27 10 0 0
4 6 19 10 1 0
5 5 24 7 0 0
6 9 21 7 0 0
7 6 20 7 0 0
8 5 30 11 4 0
9 9 23 13 2 0
10 12 26 8 1 0
11 4 24 14 0 0
12 9 22 14 0 0
13 8 23 11 0 0
14 3 21 5 0 0
15 6 18 7 0 0
16 0 15 9 0 0
17 1 10 7 0 0

Severe Outcomes Influenza Surveillance

Provincial/Territorial Influenza Hospitalizations and Deaths

To date this season, 3,010 influenza-associated hospitalizations have been reported by participating provinces and territoriesFootnote 1.

Hospitalizations (Table 2):

Intensive Care Unit (ICU) cases and deaths:

Table 2 – Cumulative number and estimated rate of hospitalizations by age-group reported by participating provinces and territoriesFootnote 1, Canada, weeks 2018-35 to 2019-17
Age Groups (years) Cumulative (August 26, 2018 to April 27, 2019)
Influenza A Influenza B Rate per 100,000 population
0-4 387 19 85.30
5-19 234 18 18.16
20-44 348 8 12.51
45-64 765 6 35.43
65+ 1216 9 100.69
Total 2950 60 -
% 98.0% 2.0% -
Table 2 – Note 1

Influenza-associated hospitalizations are reported by Alberta, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Prince Edward Island and Yukon. Only hospitalizations that require intensive medical care are reported by Saskatchewan. The cumulative rate of hospitalizations is calculated using the total population by age-group in participating provinces and territories.

Return to Table 2 – Note 1

Pediatric Influenza Hospitalizations and Deaths

To date this season, 1,246 pediatric hospitalizations have been reported (Figure 7 & 8):

To date this season, 239 ICU admissions, and 10 deaths have been reported.

Figure 7 – Number of pediatric (≤16 years of age) hospitalizations reported by the IMPACT network, by week, Canada, weeks 2018-35 to 2019-17

Figure 7. Text equivalent follows.

The shaded area represents the maximum and minimum number of cases reported by week from seasons 2010-11 to 2017-18

Figure 7 - Text equivalent
Surveillance week 2018-19 Average Min Max
35 0 0 0 0
36 0 0 0 1
37 0 0 0 2
38 0 0 0 2
39 0 1 0 3
40 0 0 0 2
41 1 1 0 2
42 5 1 0 4
43 12 1 0 3
44 15 3 1 6
45 37 3 2 4
46 41 5 1 13
47 37 4 0 9
48 40 9 2 23
49 46 15 3 28
50 51 23 4 47
51 84 32 4 72
52 89 47 7 92
1 91 40 5 75
2 62 35 4 62
3 65 38 4 67
4 66 35 7 47
5 49 40 11 59
6 47 38 15 79
7 46 40 17 120
8 45 47 25 139
9 35 50 13 153
10 45 48 17 135
11 42 41 18 118
12 42 33 13 89
13 29 32 14 67
14 34 24 12 56
15 28 23 13 56
16 33 20 10 41
17 29 16 8 37

Figure 8 - Cumulative numbers of pediatric hospitalizations (≤16 years of age) with influenza by age-group reported by the IMPACT network, Canada, weeks 2018-35 to 2019-17

Figure 8. Text equivalent follows.
Figure 8 - Text equivalent
Age Group Total
0-5 mo 136
6-23 mo 314
2-4 yr 375
5-9 yr 275
10-16 yr 146

Adult Influenza Hospitalizations and Deaths

Surveillance of laboratory-confirmed influenza-associated adult (≥16 years of age) hospitalizations by the Canadian Immunization Research Network (CIRN) Serious Outcomes Surveillance (SOS) network began on November 1st for the 2018-19 season.

To date this season, 926 hospitalizations, 107 ICU admissions and 50 deaths have been reported (Figure 9):

Figure 9 - Cumulative numbers of adult hospitalizations (>20 years of age) with influenza by age-group reported by CIRN, Canada, 2018-19, weeks 2018-44 to 2019-17

Figure 9. Text equivalent follows.
Figure 9 - Text equivalent
Age Group Total
20-34 yr 89
35-49 yr 83
50-64 yr 197
65-79 yr 270
80+ yr 287

Influenza Strain Characterizations

Since September 1, 2018, the National Microbiology Laboratory (NML) has characterized 2,057 influenza viruses ( 384 A(H3N2), 1,565 A(H1N1) and 108 B) that were received from Canadian laboratories. 

Genetic Characterization of Influenza A(H3N2):

170 influenza A(H3N2) viruses did not grow to sufficient hemagglutination titer for antigenic characterization by hemagglutination inhibition (HI) assay. Therefore, NML has performed genetic characterization to determine the genetic group identity of these viruses.

Sequence analysis of the HA gene of the viruses showed that:

A/Singapore/INFIMH-16-0019/2016-like virus belongs to genetic group 3C.2a1 and is the influenza A(H3N2) component of the 2018-19 Northern Hemisphere influenza vaccine.

Antigenic Characterization:

Influenza A (H3N2):

Influenza A(H1N1):

Influenza B:

Influenza B viruses can be divided into two antigenically distinct lineages represented by B/Yamagata/16/88 and B/Victoria/2/87 viruses. The recommended influenza B components for the 2018-19 Northern Hemisphere influenza vaccine are B/Colorado/06/2017 (Victoria lineage) and B/Phuket/3073/2013 (Yamagata lineage).

Antiviral Resistance

Antiviral Resistance – Amantadine:

439 influenza A (85 A(H3N2) and 354 A(H1N1)) viruses were tested for resistance to amantadine and it was found that:

Antiviral Resistance – Oseltamivir:

1,213 influenza viruses ( 140 A(H3N2), 1,005 A(H1N1) and 68 B) were tested for resistance to oseltamivir and it was found that:

Antiviral Resistance – Zanamivir:

1,212 influenza viruses ( 140 A(H3N2), 1,004 H1N1 and 68 B) were tested for resistance to zanamivir and it was found that:

Vaccine Monitoring

Vaccine monitoring refers to activities related to the monitoring of influenza vaccine coverage and effectiveness.

Vaccine Coverage

The Seasonal Influenza Immunization Coverage Survey is an annual telephone survey conducted between January and February that collects information related to the influenza vaccine in Canada. This survey measures vaccine coverage, which is the percentage of people who received the annual seasonal influenza vaccine in a specific influenza season.

In the 2018-19 influenza season, coverage was:

Table 3 – Influenza vaccine coverage among adults (≥ 18 years of age) by age group, gender and chronic diseaseTable 3 – Note 1, Seasonal Influenza Vaccination Coverage Survey, Canada, October 2018-February 2019
Age group (years) Male Female Combined
Total Vaccine Coverage (%) Total Vaccine Coverage (%) Total Vaccine Coverage (%)
All adults (≥18) 1568 36.6 2150 46.8 3726 41.8
18-64 1252 28.6 1640 39.9 2898 34.3
without chronic diseases 948 25.8 1171 36.1 2124 30.8
with chronic diseases 304 36.3 465 48.5 770 42.8
≥65 316 69.0 510 70.9 828 69.9
Table 3 – Note 1

Excluded from stratified analysis: eight people who did not disclose their gender and four people (18-64 years old) who did disclose whether they had any chronic diseases.

Return to Table 3 – Note 1

Vaccine Effectiveness

Vaccine effectiveness (VE) is a measure of how well the influenza vaccine is able to prevent influenza illness. Throughout the influenza season, surveillance networks estimate how well the influenza vaccine is working. Estimates can vary depending on several factors such as the study methods; the population, setting and outcomes that are being studied; the type and mix of vaccine products; the stage of the season and the kinds of influenza viruses that are circulating when the study is conducted.

The community-based Canadian Sentinel Practitioner Surveillance Network (SPSN) published an interim VE estimate in January 2019 for A(H1N1)pdm09. Subsequently, given an atypical late-season wave of influenza A(H3N2),SPSN has undertaken an additional interim analysis to assess effectiveness of the 2018/19 influenza vaccine against medically-attended outpatient A(H3N2) illness. Vaccine effectiveness (VE) monitoring methods and results are available at the SPSN website.

Based on data collected as of March 30th, 2019 from more than 2800 patients from B.C., Alta., Ont., and Que., the 2018/19 northern hemisphere vaccine effectiveness has varied depending on the strain.

The SPSN continues to monitor and will further update VE estimates at end of season.

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2021-05-10